VISDB Viral Integration Site DataBase

VIS ID

TVIS30000914

Fusion event

HIV-HIST2H2BF integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

149776808/149804440 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-1180-3p ; hsa-mir-760 ; hsa-mir-423-5p ; hsa-mir-296-3p ; hsa-mir-99b-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-125b-5p ; hsa-mir-25-3p ; hsa-let-7e-5p ; hsa-let-7a-5p

Nearest miRNA

hsa-mir-101-1/Upstream/1416077; hsa-mir-1182/Downstream/687905;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/11007, chr1-CpG: 45/Downstream/7529

Target sequence

CCCGATAATTATTTAAATTATTTCAGGTTCAATATCACTGATTGCTGTCACCATTTTCAAGGCTAATATCTAATCTGCTTTGGTTCTGCTAAGATCTCCCTGTTTTTTTGTCGTTGTTTTTTTCCTCTAGAAAAAACAGAAAAGAGAACTATCTCCAGATGGATACAGAAGAGGTGGTAAAAAGAATACACATAACGTGGCTCTCACATGATCACATATCATGCTGAAGGCTCTCAGAGGCAACTGAGGTTGGAG