VISDB Viral Integration Site DataBase

VIS ID

TVIS30000923

Fusion event

HIV-MROH1 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.3

Reference genome

Start

End

145261342/144205641 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-222-3p ; hsa-mir-1273h-3p ; hsa-mir-3166 ; hsa-mir-3929 ; hsa-mir-4251 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4768-3p ; hsa-mir-4771 ; hsa-mir-485-5p ; hsa-mir-6884-5p

Nearest miRNA

hsa-mir-1204/Upstream/125699; hsa-mir-10400/Downstream/57032;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/2267, chr8-CpG: 19/Downstream/33006

Target sequence

GTGCGCATTCAGCATTTGCGTCAATTCTGTTTTATCTCAAGAGACCTTGTTTTTCAGTCATAGCATTTCAGTACCCCATGACTTCGGAAGCCTTCTCTGGGATTCCCTGTTACATGTGTGTTGTGTCATTGTTGCCTATCTTAGATACTTTTATAAATCAAATTTTTGAAAGGCTTTTGGCCTCCAGTCATATTTTCTTCCAGAATTTTATTTTCTAAAATTGAACATAATCTTCAATAGAAATGCAGTAAAATG