VISDB Viral Integration Site DataBase

VIS ID

TVIS30000927

Fusion event

HIV-PRKCH integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q23.1

Reference genome

Start

End

61865742/61398201 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-376c-3p ; hsa-mir-432-5p ; hsa-mir-376a-3p ; hsa-mir-493-3p ; hsa-mir-4531 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-6731-3p ; hsa-mir-4254 ; hsa-mir-3690 ; hsa-mir-3938 ; hsa-mir-3675-3p ; hsa-mir-216b-5p ; hsa-mir-24-3p

Nearest miRNA

hsa-mir-208a/Upstream/749490; hsa-mir-1185-1/Downstream/2696823;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/75452, chr14-CpG: 112/Downstream/296928

Target sequence

ACCACAATACCACAATCACACCTAAATAACATCAACAATTCTGTAATATCCTCACAGATCCAGGCACGGTTTCCATTTCTTCACTTGCCTCCTGGGAGTTAATGTTTCTTTTATAATTTGTGTTTGAATTGGGATAAAATGTGGCCCATATATTGCAAATGATTAATATGCCTCTCTCTTGTTACTTTGGTTCTCTTTCCTTTACTTTTTTCTTCCAATGTTTGGTAGAAGAAACCAAGTCTCTTTTCCTGTAAA