VISDB Viral Integration Site DataBase

VIS ID

TVIS30000937

Fusion event

HIV-SRPK2 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q22.3

Reference genome

Start

End

104965085/105324339 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-181a-5p ; hsa-mir-21-5p ; hsa-mir-511-5p ; hsa-mir-7977 ; hsa-mir-6740-3p ; hsa-mir-6849-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4282 ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10525/Upstream/2852808; hsa-mir-10399/Downstream/9329006;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/22808, chr7-CpG: 182/Downstream/63474

Target sequence

CTGGGGATGGTAGCAGATATTGACAGTGCCAGGCATAGTGCCTGATGGACACTCTCACTAAAACAGCAACAGTCCTCAGCATTCTATGGGCCTACCAACTTTGCTTATTTGTATTGCACATTCATTAGCTAGATTTTCTGTTAAGAATAGTCTGGCCTGGTTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTAGGGAGGCCGAGAATTGTTTGAACTTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGC