Basic Information
VIS ID
TVIS30001025
Fusion event
HIV-SMG6 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
End
2075350/2171733 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-132/Upstream/121353; hsa-mir-10226/Downstream/521128;
Target sequence
TTTTTTTTTTTTTTTTAACATCTCCCTATGTCCCTAGTATATACTTCATGTAGGTCAAAAGACTTCCTCCTGAGAAGACATTTGTGGAGCCTCCCCAAAGGCCTGTCCCCAGGGGATGTGATCCTCACTACTCTGCAGAGAAGTCAGTCACAGGGTATTCCTGCCTCCACACAGCACTTCGCTCCCAAGCTCGGTGGCTACTACTTCCCTAGCCTAGTAACTGTTATTACACGTGGGAAATGTGAAGCCGACTGG
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Curate