Basic Information
VIS ID
TVIS30001029
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
35929323/35929326 (Hg38)
End
35930143/35929326 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/196331; hsa-let-7a-1/Downstream/894213;
Nearest TSS
ENST00000422679/Upstream/19250; ENST00000433838/Downstream/686;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/99912, chr9-CpG: 25/Downstream/42820
Nearby gene
SPAAR(No orient, 17706)
Target sequence
CCTCCGACTCACCTTTTCCTACTGGGGACTTCTCCTTCTCCCTTGCATGTGTCCATGGTGGCCAGTCACTGGGTTCCATCTTGTTTTCTCCTGAATGGAGATGATTTCAAATGGGTGAACACAAAGGAGGAGATGAAAGAAAACAACCTAAGCCTCAAGCACCCAGAGACAGTCAGACTTTTAGCACAGCTCCAGTGATTGCCTCGTAGTACATCACTTAGATTTACGTTATTATGCCCCCAGCATCTCTGTCTC
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
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