VISDB Viral Integration Site DataBase

VIS ID

TVIS30001047

Fusion event

HIV-HERPUD1 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q13

Reference genome

Start

End

56974437/56939716 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-93-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-4451 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4537 ; hsa-mir-4680-5p ; hsa-mir-3664-3p ; hsa-mir-1292-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-510-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-4797-5p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-5586-3p ; hsa-mir-612 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-759 ; hsa-mir-766-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-1225/Upstream/35363; hsa-mir-11401/Downstream/832573;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/7205, chr16-CpG: 54/Downstream/49562

Target sequence

GAGACCACCTGGCCAACATGACCAAACCCCGTCTCTACTAGAAATATAAAAATTAGCCAGGCATGGTGGTGGGCGCCTGTAATCCCAACTACCCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAAGCGGAGATTGCAGTGATTGTGCCATTGTACTCCAGCCTGAATGACAGAGCGAGACTCCATCTCAAAAAAAACAAGAAACAAAAAGAGCAAAATCTGCTTAGTGTGAACACAGTGTAGTGTAATT