Basic Information
VIS ID
TVIS30001077
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160551376/160581586 (Hg38)
End
160551639/160581586 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/681507; hsa-mir-1182/Downstream/645600;
Nearest TSS
ENST00000473358/Upstream/2070; ENST00000588034/Downstream/65372;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/161990, chr1-CpG: 24/Downstream/220307
Nearby gene
CD84(No orient, 2070)
Target sequence
CTATGGAAAGAATTGTCAATGCCTAGGAAGACAACCCCAGGAGAGGGTCATCATGAAAGTCTAGAAAGATTACACCATTAAAGATGCTATCATTGTTGCAGAAAAAGTGGTGAAAGCCATTAAGCCTGAGACAATAAACTCTGCTTGAGGAAACTGTGTCCAAATGTTGTGCGTGACTTCACAGGATTTATGACAGAGCTAATCAAGGAAATTATGAAAGATATTGTGGATATGGCAAAAAAAAAAGTTGGGGTA
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Curate