Basic Information
VIS ID
TVIS30001098
Fusion event
HIV-LOC107986950 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
66852853/65940618 (Hg38)
End
66853812/65940618 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986950
Nearest miRNA
hsa-mir-124-1/Upstream/1561361; hsa-mir-10400/Downstream/8607925;
Nearest TSS
ENST00000518652/Upstream/97866; ENST00000522619/Downstream/80942;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/97903, chr8-CpG: 23/Downstream/172492
Nearby gene
DNAJC5B(No orient, 80938)
Target sequence
CTAACATGTACCCATTCTACTCTGCCTATTCTGCCTATAACATGTGTCTCCCACTGGATACATTCCCAACCAGGAAGGTTTGATAGTTATCTCTTTCCAGTCAAGAATTCTGTGTTTTGGTCAATAATTTGTAATAGGCTTGACATGTGATTCAGTGTGGTCTCTAACAGAAAAGTCTGCTTTAGGGAATAAACTGGATGGTGAAGGTCAAAATTTTTACCTACTCAAGGGTTGTAACTGAACTAATGGACTTAG
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
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