VISDB Viral Integration Site DataBase

VIS ID

TVIS30001100

Fusion event

HIV-ZC3H15 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q32.1

Reference genome

Start

End

187368033/186502362 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-96-5p ; hsa-mir-122-5p ; hsa-mir-143-5p ; hsa-mir-24-3p ; hsa-mir-3135b ; hsa-mir-3622b-5p ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-4430 ; hsa-mir-504-3p ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-8057

Nearest miRNA

hsa-mir-10b/Upstream/2123318; hsa-mir-1244-1/Downstream/1795130;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/15480, chr2-CpG: 92/Downstream/87310

Target sequence

CCGTCTCAACAAAAAGAAAAAGAAAAATGTGTTAAGCCATGAGTCTTATAACACAGCATTAGTGTCTAAGGAGATATGTGTTGTGGGAGTAGTAGATAAGATTACAGTATTTAATCTTCATTTCTTTATTTAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAAGTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTATGTCCTTTTCTTGAATTGAGTTGCTGT