VISDB Viral Integration Site DataBase

VIS ID

TVIS30001101

Fusion event

HIV-AKAP13 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q25.3

Reference genome

Start

End

86108447/85564322 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-423-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-16-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-8074 ; hsa-mir-6778-3p ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-1281 ; hsa-mir-3667-3p ; hsa-mir-6832-3p ; hsa-mir-183-5p

Nearest miRNA

hsa-mir-10393/Upstream/183660; hsa-mir-11181/Downstream/206174;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/182873, chr15-CpG: 20/Downstream/194396

Nearest cancer related gene

AKAP13(OG, No orient, 0)

Target sequence

GGTTACATTTGCTTTATCTGTGTGTGTATACATATACATATATAGAATTTTACTGAAGTCTTTGAGAGTAAGTTGCAGAATCATGACCTTCTGTTCCTAAATATTTCAGCATATATTTCCTAAGAACAAGGACAGTCAATACAGTAACAGTGCATTTATCAAAATTAGTAATTTATCATTAATACAATAATCTAATATATAGTAGTTTATATTCTACTTTTCACCATCTGCTTAATAGTGTTCTTTTAAGTATTT