VISDB Viral Integration Site DataBase

VIS ID

TVIS30001130

Fusion event

HIV-ST8SIA4 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q21.1

Reference genome

Start

End

100213789/100877260 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-8485 ; hsa-mir-135a-5p ; hsa-mir-3140-3p ; hsa-mir-4776-3p ; hsa-mir-487b-5p ; hsa-mir-487a-5p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-664a-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-181c-5p

Nearest miRNA

hsa-mir-10397/Upstream/60695; hsa-mir-103a-1/Downstream/9636569;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/341244, chr5-CpG: 32/Downstream/23603

Target sequence

GATTCTAAAAATTATTACTGAAATTTTGTAATAATTTTAACCAGTTCAATGTGGCTAGGAAACTATTTCAAGAAAGAATAATGAGGATTGATTAAATTTGAAGCAAAAATTCTCTGGACCTTCTAAAGTAGAGGAGACACATTGGCAATAACAAAGGGCTACGCATACACTTGAGGAAGGAAATGTGTTTGTTACACAAATAATGAGTCAGAAGGCAACAAGAAGAACAAGAGTTGTAAGGAAGAAAGAAAGTCT