VISDB Viral Integration Site DataBase

VIS ID

TVIS30001148

Fusion event

HIV-CYP3A5 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q22.1

Reference genome

Start

End

99265297/99667462 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-4254 ; hsa-mir-3690 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-3191-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-6728-3p ; hsa-mir-4438

Nearest miRNA

hsa-mir-10525/Upstream/258198; hsa-mir-10399/Downstream/426098;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/50200, chr7-CpG: 76/Downstream/251517

Target sequence

ATAGTCCAGCCCCAAGTTGGGAAAAGTAATTATCCCTTTCTTTTTCCTTCTATTTATGGAATAAAAAATTAAGAGAAAAGAATTTTCAAGGAAATTGCATTATTCCTTCAAAACAGGTTTCTAGTCTTTAAGTATTACCTACTTTTCAAAAAAAAACCACCACATCATGGCATCCCTTTTTCAAATTGCCCATGCTGTAGGTGTATTAAAGA