VISDB Viral Integration Site DataBase

VIS ID

TVIS30001151

Fusion event

HIV-MAP7 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q23.3

Reference genome

Start

End

136842476/136520445 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-3613-3p ; hsa-let-7c-3p ; hsa-mir-6866-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-4766-3p ; hsa-mir-548p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3646 ; hsa-mir-106a-5p ; hsa-mir-526b-3p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-130a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-301a-3p ; hsa-mir-493-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5692a ; hsa-mir-4436b-5p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-4793-5p ; hsa-mir-205-3p ; hsa-mir-218-1-3p ; hsa-mir-3606-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-659-3p ; hsa-mir-6758-3p ; hsa-mir-9-5p

Nearest miRNA

hsa-mir-10398/Upstream/1281189; hsa-mir-1202/Downstream/1914768;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/159310, chr6-CpG: 160/Downstream/29243

Target sequence

GTTTACCTTTGTTTCATAATGTTCCATTTACTCTGAAAAGTACAGGGTATAAAGAGGAGTGAGTCCTGGCCCTTACAAAGCTTACAGTGTCAAGAAGGACATGGGTGTGTGCATGGATGATTTCATTACACTGATGTAAGTCAGTAATGGATTTACAGTGCGGAAGGAGCACAGTGAGGGGCTGCCCTTTGTGCCAGGAATGAGGAGGCTGGGAGCGAGAGAGGAGGTTTCCTGCAGATGGCACCCAAGGAAAGT