VISDB Viral Integration Site DataBase

VIS ID

TVIS30001170

Fusion event

HIV-MYB integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q23.3

Reference genome

Start

End

135525716/135203890 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-15a-5p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-34b-5p ; hsa-mir-150-5p ; hsa-mir-107 ; hsa-mir-16-5p ; hsa-mir-155-5p ; hsa-mir-424-5p ; hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-198 ; hsa-mir-192-5p ; hsa-mir-423-3p ; hsa-mir-200a-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-150-3p ; hsa-mir-103a-3p ; hsa-mir-195-5p ; hsa-mir-105-5p ; hsa-mir-106a-5p ; hsa-mir-503-5p

Nearest miRNA

hsa-mir-10398/Upstream/224458; hsa-mir-1202/Downstream/35270;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/20617, chr6-CpG: 84/Downstream/293473

Nearest cancer related gene

MYB(OG, No orient, 0)

Target sequence

TAACCCTAAAGTGGGTGTGTGTTGATGAAATATAACCAATTCCAAATTAATCCTGAGCCAAATGTAAATAAGAATGCAAATTTTGCTTCCCTAAATTATTTAAAGCAGTTTCTGACATTAAATAGCCCAATACCCAGCCACCTGCAGAGCCCTCTCCTCCATCCCCCTGTGCCATGCAGAGGGAAACTTCATAACCCTAGAGGAAGTGAAGAGCCTGGATTCAGAAGCTGAAGGTCATATTTCTTGCTGTAAGTT