Basic Information
VIS ID
TVIS30001181
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
70658333/41345728 (Hg38)
End
70659195/41345728 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/111893; hsa-let-7a-1/Downstream/29464247;
Nearest TSS
ENST00000422679/Upstream/12766; ENST00000496386/Downstream/353182;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/71757, chr9-CpG: 27/Downstream/13723
Nearby gene
CBWD5(No orient, 168122)
Target sequence
CCTGGATATTCATTGGTACATTATGTCTACTGGAGTCTTTGTGTCAATCTGAGCTCTGATGTCCACCTAGAGATTGGGTATCCACCTAAGGCCTGGTGTTTACATGGGGCCTGTAACACGAGGTTCCAGATGAACTCAGATGTCCACCTGAGGCCTGATGTCCACCTGAGTTCTGAGTGTTCACATAGGGCCTGCTGTCAACTTGGGACCTAAGTATTTACCTAGGGCCTGGGTGTCCACCTGGTGCCTGACTTC
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Curate