Basic Information
VIS ID
TVIS30001183
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
66970955/63065983 (Hg38)
End
66971643/63065983 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9F
Nearest miRNA
hsa-mir-101-2/Upstream/21832148; hsa-let-7a-1/Downstream/7743992;
Nearest TSS
ENST00000422679/Upstream/167877; ENST00000431077/Downstream/662894;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/149938, chr9-CpG: 299/Downstream/382887
Nearby gene
LOC101928381(No orient, 37126)
Target sequence
TTTTTACAGAGCAGCTTTGAAACACGCTTTTTGTGGAATCTGCAATTGGAAATTTCGATAGTTCTGAGGATTTCGTTGGAAACGGGATTACAAATAGAAAGTAGACAGCAGCTTTCTCAGAAACTGCTTTGTGATGTTTGCATTCAAGTCACCTAGTTTAACATTCCCTTTCATAGAGCAGGTTTGAATCACTGTTTCTGTCGTATCTGGAAGTGGATATTTCGAGCACTTTCAGGCCTATGGTGAAAAAGGAAA
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Curate