Basic Information
VIS ID
TVIS30001184
Fusion event
HIV-chr17 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
39475259/41319007 (Hg38)
End
39476116/41319007 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/1125344; hsa-mir-10226/Downstream/198157;
Nearest TSS
ENST00000595228/Upstream/3312; ENST00000430006/Downstream/31805;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/455158, chr17-CpG: 83/Downstream/208649
Nearby gene
KRTAP17-1(No orient, 3312)
Target sequence
ATTGTGGCATGATAAATGATTTTTAATTTCTTCTCTTTTTTGTATTTTTTAGAAATTTGCAGTGTGTAGGTATGAAATTTATAATGTAAACATTTTATTATTATTATTATTTGAATACAGTGTCAAAGGCAAATGAAAACCTGGGAACAATACAAGTAACTCATAGACAAAGCTTGCTTTCATTTTCTATTTAACAAAGGATTTCCATCAATCAAAGAGAAAGACCAGCAACCGAGTAGAAAAATTGACAATGGA
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
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