VISDB Viral Integration Site DataBase

VIS ID

TVIS30001254

Fusion event

HIV-ERLIN1 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q24.31

Reference genome

Start

End

101918772/100158551 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-30a-5p ; hsa-mir-615-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-30c-5p ; hsa-mir-17-5p ; hsa-mir-218-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p

Nearest miRNA

hsa-mir-107/Upstream/1233983; hsa-mir-1307/Downstream/816434;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/43169, chr10-CpG: 43/Downstream/27263

Target sequence

CTTATCCAATGTGAGAATCTGTCTTTTAACTGGTGAGTTTAGTCTTTTTATATTTATTGTGGTTACTGCTATATTTGGATGTGTTTGTATCATTTGATTATGTGCTATTTACCATGCATTTTTCTCTGCTTCTTTTTCCCTTTTCTGATTGGTATTGAATTGATTGAATTTTCTTTTCTTTTCTTCCTTTTACTTGATTGGAAGTTTTACATTCCATTGCTGGAATGTATAACTAGTTGTTAATCATTCTATCCT