VISDB Viral Integration Site DataBase

VIS ID

TVIS30001274

Fusion event

HIV-NR2C2 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p25.1

Reference genome

Start

End

15044138/15002000 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-mir-26b-5p ; hsa-mir-143-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-4795-3p ; hsa-mir-556-3p ; hsa-mir-7848-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-4490 ; hsa-mir-126-5p ; hsa-mir-656-3p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-302c-3p ; hsa-mir-520f-3p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520e ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-504-5p ; hsa-mir-587 ; hsa-mir-374b-5p ; hsa-mir-6884-3p ; hsa-mir-374a-5p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-605-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-5011-5p ; hsa-mir-8083 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1277-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-133a-3p ; hsa-mir-10a-3p ; hsa-mir-203a-3p

Nearest miRNA

hsa-mir-12127/Upstream/4607438; hsa-let-7g/Downstream/494239;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/53523, chr3-CpG: 70/Downstream/62785

Nearest cancer related gene

NR2C2(TSG, No orient, 0)

Target sequence

CTTCACAAAAAACTCTTCCTAAAATTAGAAGAAAACACTTCCCAATTCTGTGAGGCCAATATTACCTGATACTGAAACCAAAGACATCACAGGAAAAGAAAACTACAGACCAATATCTCTTATGAATAGAAACACAAACAATCCTCTACAAAACACTAGCAAACCAAATCCAGTGGTATATAAAGGATTATACACCACGAATAACTGGGGTTCATCCCAGGAAAGCAAGCTTGTTCAAATATGAAAATCAAACAG