VISDB Viral Integration Site DataBase

VIS ID

TVIS30001275

Fusion event

HIV-PHF21A integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p11.2

Reference genome

Start

End

46119970/46097629 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-221-3p ; hsa-mir-548c-3p ; hsa-mir-7855-5p ; hsa-mir-216a-5p ; hsa-mir-129-5p ; hsa-mir-1909-3p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4468 ; hsa-mir-6081 ; hsa-mir-6132 ; hsa-mir-6722-3p ; hsa-mir-6754-5p ; hsa-mir-6836-5p ; hsa-mir-759

Nearest miRNA

hsa-mir-129-2/Upstream/405853; hsa-let-7a-2/Downstream/278773;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/174407, chr11-CpG: 65/Downstream/22199

Target sequence

GTTTTTTATTCTACTTAAAAGCCTTCCTGTAATTACCCTCTGGCCTCAAAGTCTTTTATTAGCTAGTGTGGCTCACATTTTTCAAGCATATAGAAGTTAATATGCACTGTTTTAGAACTTAGACACTACAACCACTGGTCAAGTAATAGATAATCAGTGTTTACTACACCCATCTGTGAATTGTGGATTTTTATTACTTCCATTTATTTATGTACAGTCTAAATCTTTGTAGATTTTAGCTAGTCATCTGGACTT