VISDB Viral Integration Site DataBase

VIS ID

TVIS30001294

Fusion event

HIV-SNX9 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.3

Reference genome

Start

End

158213126/157791383 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-196b-5p ; hsa-mir-92a-3p ; hsa-mir-93-5p ; hsa-mir-4258 ; hsa-mir-4519 ; hsa-mir-7156-3p ; hsa-mir-8077 ; hsa-mir-7160-5p ; hsa-mir-4663 ; hsa-mir-6886-3p ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-93-3p ; hsa-mir-1184 ; hsa-mir-4649-3p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-5088-3p ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6757-3p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6836-3p ; hsa-mir-3679-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-136-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p

Nearest miRNA

hsa-mir-10398/Upstream/262183; hsa-mir-1913/Downstream/818324;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/118335, chr6-CpG: 171/Downstream/31186

Nearby gene

SNX9(No orient, 31788)

Target sequence

GTCCCCTCTGCAACTATCCAATCAGTCTCCTGTTTGAGTTGGCTGAAAATGCCTGAAATAACCATAAACCATAGCACCTAGGACAATGCCTGGTCCTTGGTAGGTTTTCAATAAATGTATCTTGAATAAATAAATGAGAATCATGATTTTGCTTATGAGTATTTTTGAAAAGCTGTGCCCATCCTCCTCAACAAATACTTCTCTAGCACTTGGCAATGTGACACCTTTCTTCTCCTTGGCACAAACTGCAGGTGT