Basic Information
VIS ID
TVIS30001302
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9002798/8960835 (Hg38)
End
9003668/8960835 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/2808558; hsa-mir-107/Downstream/3169925;
Nearest TSS
ENST00000439456/Upstream/62846; ENST00000456526/Downstream/9290;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/446696, chr10-CpG: 72/Downstream/446340
Nearby gene
LINC02676(No orient, 46239)
Target sequence
GATAGAGAGAGAGAGATATTGAGGGAGAGAGATCCTTATCTTCTTATAAAGCCAGAGTCCTATCAAATTAAGGTCGCAACCTTAAGATCTTATTTAATTTTAATTACATCCTAAAGACCCTATGTCCAGATACAATCACATTTCGGGTTAGGACTGAAGCATGAAATTTTGGGGACACAGTTCTTTCCACAGCATCATCTTCATGAAATTTAAATACAAACAAAAGCAAACTAATATATTATATAGACGCTCATA
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Curate