VISDB Viral Integration Site DataBase

VIS ID

TVIS30001307

Fusion event

HIV-ZBTB25 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q23.3

Reference genome

Start

End

64955520/64488585 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-7977 ; hsa-mir-4804-3p ; hsa-mir-138-2-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-3180-5p ; hsa-mir-498 ; hsa-mir-491-3p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-4528 ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-100-3p ; hsa-mir-548av-3p ; hsa-mir-5089-5p ; hsa-mir-4256 ; hsa-mir-7973 ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4750-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-7108-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-526b-5p ; hsa-mir-4261 ; hsa-mir-494-3p ; hsa-mir-4778-3p ; hsa-mir-6736-3p ; hsa-mir-3688-3p ; hsa-mir-4694-3p

Nearest miRNA

hsa-mir-208a/Upstream/393460; hsa-mir-1185-1/Downstream/297041;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/22761, chr14-CpG: 203/Downstream/14664

Target sequence

TCACCCCAAACAGAAACTTTGTACCCATTAAGCAATAACTCCCCATCTCACCCTCTCAACCCCCAGAAACCGCTAATTTACTTTCTATCTCTATGAATTTGCCTATTCTAGATATTTTATATAATACTTGTCCTTTTGTGTCTGGCTTATTTTACTTAGCATGATATTTTCTGGGTTCTCCATGTTGTAGCATGTATCAGAACTTCCTTCTTTTTAT