Basic Information
VIS ID
TVIS30001309
Fusion event
HIV-ZGPAT integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62346826/63715474 (Hg38)
End
62347084/63715474 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZGPAT
Nearest miRNA
hsa-mir-1-1/Upstream/428608; hsa-mir-1914/Downstream/203975;
Nearest TSS
ENST00000382410/Upstream/6385; ENST00000484569/Downstream/14903;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/6552, chr20-CpG: 22/Downstream/19423
Target sequence
GTGATTCACCCACCTTGGCCTCCCGAAGTGCTGGGATTACAGGCGTGAGCCACCGCAGCGAGCCTTATCTTTTTAACAGTTAAAAGTTTAAGGCCTTATCATGTAATAACATTGCTGGATTTGATTTGCTGCTGTTTTGTTGAGAATATTTGCATCTGTATTGATAAGGGATATTGGTCTGTAGTTTTCTTTTCTTGGCATGTCTTTGTATAGCTTTGATGCCAGCATAATATTGGCCTCATAGAATGAGTTAGG
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
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