VISDB Viral Integration Site DataBase

VIS ID

TVIS30001311

Fusion event

HIV-ZHX3 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q12

Reference genome

Start

End

39862989/41233789 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-877-3p ; hsa-mir-3171 ; hsa-mir-4778-5p ; hsa-mir-100-3p ; hsa-mir-548e-5p ; hsa-mir-574-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-1183 ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-6749-3p ; hsa-mir-6826-3p ; hsa-mir-3117-5p ; hsa-mir-150-5p ; hsa-mir-6887-3p ; hsa-mir-6795-3p ; hsa-mir-186-3p ; hsa-mir-483-3p ; hsa-mir-425-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/64711; hsa-mir-1-1/Downstream/3174331;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/95597, chr20-CpG: 121/Downstream/83165

Target sequence

CCTTTCAAACCCTAATCACACATATGAACTAATTACTTAGCTTAGTCATCAAATTTTGCTTGTGCTTCATATGTGCTGAGTGTCAGAGGCGTAGTAATAAAAAGGTAGAACTCTTGCCTCAGCCCACAGTTTTGTGGGGGAGGAATCTTGTACCCACAATTGCAATGCAGTGCCACCAGTGCAACAGGGAAGTTGGGCCCGAGTGAGGCTGTTAGATGTTGCTGGGGAGGGGGCACCAAGAAGGGTATCAGAGGA