VISDB Viral Integration Site DataBase

VIS ID

TVIS30001313

Fusion event

HIV-ZNF148 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q21.2

Reference genome

Start

End

124972859/125253619 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-203a-3p ; hsa-mir-335-5p ; hsa-mir-186-5p ; hsa-mir-132-3p ; hsa-mir-181a-5p ; hsa-mir-93-5p ; hsa-mir-425-5p ; hsa-let-7b-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-513a-5p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-369-3p ; hsa-mir-5692a ; hsa-mir-155-5p ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-136-5p ; hsa-mir-885-5p ; hsa-mir-5680 ; hsa-mir-488-5p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-6505-5p ; hsa-mir-6806-5p ; hsa-mir-4765 ; hsa-mir-4693-3p ; hsa-mir-4774-5p ; hsa-mir-4490 ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-5586-3p ; hsa-mir-514a-5p ; hsa-mir-618 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-9-3p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-7976 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-4484 ; hsa-mir-6768-3p ; hsa-mir-548an ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a

Nearest miRNA

hsa-let-7g/Upstream/102067; hsa-mir-12124/Downstream/536785;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/40716, chr3-CpG: 24/Downstream/103769

Target sequence

GATGTTACTAATAGGAAGATGTTAAATTTCACCAAATGTTTTCTACCTACCTACTGAGATAAAATTTCCCTCCTTAATTTGTTAATTAAGGGTGAATTTGATTTGCTGATATGTGAATATTAAGCCAGTTTTGATACTTGAAAAGTTGATGTTGTCATGATAAATTATATTTAAATACTGCTGGATCTGACAGTTAATACTCTACATAGAACTCTTAAACCCATGTTGATAAGACAGAAATAGGTCTGCAATTTT