VISDB Viral Integration Site DataBase

VIS ID

TVIS30001316

Fusion event

HIV-ATF6 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q23.3

Reference genome

Start

End

161788121/161818100 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-503-5p ; hsa-mir-424-5p ; hsa-mir-335-5p ; hsa-mir-191-5p ; hsa-mir-199a-5p ; hsa-mir-552-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6871-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-7153-3p

Nearest miRNA

hsa-mir-101-1/Upstream/590839; hsa-mir-1182/Downstream/339007;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/67814, chr1-CpG: 28/Downstream/165726

Target sequence

ATTAGTCTAATTTCTTTGGGGAAGTGAGAGAGGTGGCAAAATTAAGTGCATAAAAAGCGCCAACCTATATTACATTGATTAGTATGAGTACACAGATGGTTGAATTACTAATTTCTATATATTTTGCAATGGACTTTAAAAAGTAAACACTCTAGAGTGTTCAATAACTCTTACTGAGACCAGTAAATAAAGTTAAAGAATGTAATCTATTTCCTTTTTTTTTTTTTTTTT