VISDB Viral Integration Site DataBase

VIS ID

TVIS30001318

Fusion event

HIV-CBL integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q23.3

Reference genome

Start

End

119144459/119272992 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-let-7c-5p ; hsa-mir-150-5p ; hsa-mir-155-5p ; hsa-mir-98-5p ; hsa-mir-188-3p ; hsa-mir-218-5p ; hsa-mir-1273d ; hsa-mir-7973 ; hsa-mir-6846-3p ; hsa-mir-6859-3p ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-1224-3p ; hsa-mir-1306-5p ; hsa-mir-216a-5p ; hsa-mir-124-3p ; hsa-mir-1972 ; hsa-mir-3150b-3p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4693-3p ; hsa-mir-4717-5p ; hsa-mir-4784 ; hsa-mir-5192 ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-10392/Upstream/362205; hsa-let-7a-2/Downstream/39958;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/66148, chr11-CpG: 19/Downstream/37694

Nearest cancer related gene

CBL(OG, No orient, 0)

Target sequence

GTAATTCAAAATACAGGTCAACTTCTTTAAGAAAAGAAAGAAGGGGACCAGGAGCCACGGTGCATGCCTTTGGGAGGCCCAGCACTTTGAGAGGCCAAAGTGGGCAGACTGCTTGAGCCCAGACTGGGCAATATGGTGAAACTTTGTCTCTACAAAAACAAACAAACAAACAAAATTAGCCAGACTAATTAGTTCCAGCTACTCTGGAGGCTGAGGTGGGAAAATCACTTGAACTTTGGAGGCAGAGGTTGCAAG