VISDB Viral Integration Site DataBase

VIS ID

TVIS30001328

Fusion event

HIV-FYN integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q21

Reference genome

Start

End

112074851/111753260 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-93-3p ; hsa-mir-125a-3p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-500a-3p ; hsa-mir-3924 ; hsa-mir-584-5p ; hsa-mir-431-5p ; hsa-mir-6760-3p ; hsa-mir-1208 ; hsa-mir-34c-3p ; hsa-mir-5580-3p ; hsa-mir-106b-5p

Nearest miRNA

hsa-mir-10398/Upstream/4969040; hsa-mir-1202/Downstream/7315787;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/268954, chr6-CpG: 116/Downstream/119372

Nearest cancer related gene

FYN(OG, No orient, 0)

Target sequence

GGTTCTTTACAGATTTCAGTAATGCATTATCCAAAAAGGCCTCTCATAATACCTTTGGGAATAAGATAGGAAAATGTGGGCTAGATACTAGAACAATGAAGTGAATTATAATATTTAAGTGGGGCTGATTGGTGAGCTCAGGTCCACCTAGAAGGTGGTCTCAGGAGGCCTAAAATGGGGCTCTGAGCTCTTCAAAAACTTGTCAACATCTTAGATGAAGATATTGAAAATTTGTATGGTGAAATATTCAGATGG