VISDB Viral Integration Site DataBase

VIS ID

TVIS30001334

Fusion event

HIV-PCLAF integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q22.31

Reference genome

Start

End

64667154/64374848 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-122-5p ; hsa-mir-181a-5p ; hsa-mir-26b-5p ; hsa-mir-1227-3p ; hsa-mir-466 ; hsa-mir-539-5p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4705 ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-3156-5p ; hsa-mir-551b-5p ; hsa-mir-335-3p ; hsa-mir-4715-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-149-5p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-6504-3p ; hsa-mir-455-5p ; hsa-mir-4438 ; hsa-mir-7703 ; hsa-mir-6807-5p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-3934-5p ; hsa-mir-512-5p ; hsa-mir-552-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6872-3p ; hsa-mir-183-5p

Nearest miRNA

hsa-mir-10393/Upstream/503829; hsa-mir-11181/Downstream/387539;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/18524, chr15-CpG: 25/Downstream/12860

Nearest cancer related gene

PCLAF(OG, No orient, 0)

Target sequence

GTGTGCAACCTTTAAAAAAAAGTTTCCGAGTTTCATCCGTTGTATTTCATGAATATCTCATTCCTTTTTTCCTTTTTTTCTTTCTTTCTTCCTTTTTTTTTTTTTTT