VISDB Viral Integration Site DataBase

VIS ID

TVIS30001336

Fusion event

HIV-MLLT3 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p21.3

Reference genome

Start

End

20618898/20617935 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-3924 ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b

Nearest miRNA

hsa-mir-101-2/Upstream/115593; hsa-let-7a-1/Downstream/98170;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/683106, chr9-CpG: 167/Downstream/2490

Nearest cancer related gene

MLLT3(OG, No orient, 0)

Target sequence

TAAGGTAACTTTGTTTAGGCACCTTGACAATCAACAAATTGGCATTATGAAATTAAAGATGATCAACCTCTATTTTACCATTGTTTTTCTGCTTCAGTGGATGTGTGCATTGATGTTATTTTTATTTCCTATACTTAATGATTTTCTGTCTGCCCTGAGGGAACATGAGGGTGCTGCTCACATAGGCCACACCTGGGAGTTGTTGCTAGGCGTGGTAAGCTGCTTGATAGCAGTGATGACTTCTCAGAGGTCTCT