Basic Information
VIS ID
TVIS30001347
Fusion event
HIV-PHF2 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
96401254/93638972 (Hg38)
End
96401971/93638972 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHF2
Nearest miRNA
hsa-mir-101-2/Upstream/44078; hsa-let-7a-1/Downstream/180385;
Nearest TSS
ENST00000422679/Upstream/62225; ENST00000443771/Downstream/218111;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/61418, chr9-CpG: 38/Downstream/187344
Target sequence
CTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACCATGCCTGGCCAAGTTTGTTTTTCTTTTTCAAGTTTGTTTTGATCATTCTAGGTCCCTTGTATGTCATTTGAATTTTAAGGTCAGCTTGTCAGTTTTTACAAGGAAGTCAGCTGGGATTTTGAAAGTAATTGCTTTCAATCTGTAGATCACTCTGCAGGTATTTCCATCTTAACAGTGTTAAAACCTCTAAGCTGTGAACATGGTTACTTTTCCATTTATT
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
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