VISDB Viral Integration Site DataBase

VIS ID

TVIS30001354

Fusion event

HIV-SMARCC1 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

47728873/47686743 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-29b-3p ; hsa-let-7f-5p ; hsa-let-7c-5p ; hsa-mir-320c ; hsa-mir-544a ; hsa-mir-6738-3p ; hsa-mir-570-3p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-3140-5p ; hsa-mir-4705 ; hsa-mir-34b-3p

Nearest miRNA

hsa-mir-12127/Upstream/2824762; hsa-let-7g/Downstream/162812;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/107102, chr3-CpG: 109/Downstream/94688

Nearest cancer related gene

SMARCC1(TSG, No orient, 0)

Target sequence

GGAGGCTGAGGCAGGAGGATCACTTGAGACCAAAAGATCAGGACCAGCCTGGGCAACATAGTCAGACTTTGTCTCTACTAAAAATTTAGAAATTAGCTGGACATAGTGGTACATGCCTGTAGTCCCAGCTACTTTAGAGGCTGAAGTCAGCAAGATTGCTTGAGCATGGGAGGTCAAGACTACAGTGAGCTGTGTTTCCACCACTGCCCTGCACTCCAGTCTAGGCAAGACCCTGCCTCAAAAAAAAATAAAATA