VISDB Viral Integration Site DataBase

VIS ID

TVIS30001356

Fusion event

HIV-STIL integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p33

Reference genome

Start

End

47747739/47281229 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-651-5p ; hsa-mir-7977 ; hsa-mir-4266 ; hsa-mir-3178 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4486 ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-4779 ; hsa-mir-4695-5p

Nearest miRNA

hsa-mir-12136/Upstream/2735677; hsa-mir-101-1/Downstream/3778608;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/48704, chr1-CpG: 51/Downstream/32806

Nearest cancer related gene

STIL(OG, No orient, 0)

Target sequence

GTTACCTACCCAAGACACACAACTAGTAAGTAGTAAAGCTGGGATTCTATTTCAGGAGGTTTGGTTTTAGAATCTGGTACTTTTAATAACCATATAGACTCAACATTATATACTATCACTAGAGCTTGACATTGGTTTTTATCACTATATTCTGAGAAAACATTATACTTGCTTTCAGAGGTTAATTGCTAAAATTCTTGTCATAATTTTTTTATTGCTACCAACCTGTGGGTCATTTTAGAATTGTTTAATTCT