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TVIS30001360
Basic Information
VIS ID
TVIS30001360
Fusion event
HIV-TPM3 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
25011556
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
154149223/154176747 (Hg38)
End
154149473/154176747 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
TPM3
miRNAs that regulate target gene
hsa-mir-1-3p
;
hsa-mir-16-5p
;
hsa-mir-145-5p
;
hsa-mir-26b-5p
;
hsa-mir-615-3p
;
hsa-mir-92a-3p
;
hsa-mir-218-5p
;
hsa-mir-6516-5p
;
hsa-mir-455-3p
;
hsa-mir-6499-3p
;
hsa-mir-4537
;
hsa-mir-2467-3p
;
hsa-mir-4497
;
hsa-mir-6077
;
hsa-mir-1827
;
hsa-mir-6511a-5p
;
hsa-mir-1910-3p
;
hsa-mir-6768-5p
;
hsa-mir-488-3p
;
hsa-mir-4483
;
hsa-mir-1293
;
hsa-mir-7110-5p
;
hsa-mir-6752-5p
;
hsa-mir-6842-5p
;
hsa-mir-5196-5p
;
hsa-mir-4747-5p
;
hsa-mir-4533
;
hsa-mir-5581-5p
;
hsa-mir-4297
;
hsa-mir-6730-5p
;
hsa-mir-5681a
;
hsa-mir-6732-5p
;
hsa-mir-9500
;
hsa-mir-4779
;
hsa-mir-3614-3p
;
hsa-mir-6891-5p
;
hsa-mir-3173-3p
;
hsa-mir-4428
;
hsa-mir-4648
;
hsa-mir-6801-5p
;
hsa-mir-6766-5p
;
hsa-mir-6756-5p
;
hsa-mir-7106-5p
;
hsa-mir-365b-5p
;
hsa-mir-365a-5p
;
hsa-mir-4294
;
hsa-mir-765
;
hsa-mir-6081
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-6776-5p
;
hsa-mir-761
;
hsa-mir-3619-5p
;
hsa-mir-214-3p
;
hsa-mir-4257
;
hsa-mir-6847-5p
;
hsa-mir-4756-5p
;
hsa-mir-4739
;
hsa-mir-1321
;
hsa-mir-6510-5p
;
hsa-mir-6873-5p
;
hsa-mir-608
;
hsa-mir-4651
;
hsa-mir-8052
;
hsa-mir-3199
;
hsa-mir-4515
;
hsa-mir-5195-3p
;
hsa-mir-6745
;
hsa-mir-363-5p
;
hsa-mir-6124
;
hsa-mir-3148
;
hsa-mir-570-3p
;
hsa-mir-545-3p
;
hsa-mir-371b-3p
;
hsa-mir-6838-5p
;
hsa-mir-497-5p
;
hsa-mir-424-5p
;
hsa-mir-195-5p
;
hsa-mir-15b-5p
;
hsa-mir-15a-5p
;
hsa-mir-2278
;
hsa-mir-1276
;
hsa-mir-29b-2-5p
;
hsa-mir-4717-3p
;
hsa-mir-1912
;
hsa-mir-1295b-5p
;
hsa-mir-23b-3p
;
hsa-mir-23a-3p
;
hsa-mir-130a-5p
;
hsa-mir-23c
;
hsa-mir-4724-5p
;
hsa-mir-25-5p
;
hsa-mir-658
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-6087
;
hsa-mir-4635
;
hsa-mir-4459
;
hsa-mir-4695-5p
;
hsa-mir-665
;
hsa-mir-6771-5p
;
hsa-mir-7977
;
hsa-mir-7160-5p
;
hsa-mir-4722-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-4649-3p
;
hsa-mir-6746-5p
;
hsa-mir-4768-3p
;
hsa-mir-5690
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-216b-5p
;
hsa-mir-6715b-3p
;
hsa-mir-6715a-3p
;
hsa-mir-1273f
;
hsa-mir-1302
;
hsa-mir-133a-3p
;
hsa-mir-133b
;
hsa-mir-181c-3p
;
hsa-mir-197-5p
;
hsa-mir-200c-5p
;
hsa-mir-3132
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-3196
;
hsa-mir-383-5p
;
hsa-mir-4282
;
hsa-mir-4298
;
hsa-mir-4330
;
hsa-mir-4451
;
hsa-mir-4687-5p
;
hsa-mir-4690-3p
;
hsa-mir-506-5p
;
hsa-mir-550a-3p
;
hsa-mir-5685
;
hsa-mir-6758-3p
;
hsa-mir-6816-5p
;
hsa-mir-6832-5p
;
hsa-mir-6835-5p
;
hsa-mir-6843-3p
;
hsa-mir-6848-3p
;
hsa-mir-6861-5p
;
hsa-mir-138-1-3p
;
hsa-mir-146b-3p
;
hsa-mir-3163
;
hsa-mir-3190-5p
;
hsa-mir-339-5p
;
hsa-mir-3926
;
hsa-mir-4421
;
hsa-mir-4684-5p
;
hsa-mir-4786-3p
;
hsa-mir-548s
;
hsa-mir-5699-3p
;
hsa-mir-593-3p
;
hsa-mir-6779-3p
;
hsa-mir-6818-3p
;
hsa-mir-6895-3p
;
hsa-mir-7843-3p
Nearest miRNA
hsa-mir-101-1/Upstream/72155; hsa-mir-1182/Downstream/16918;
Nearest TSS
ENST00000473358/Upstream/505;
ENST00000441890/Downstream/1436;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/185713
,
chr1-CpG: 49/Downstream/6045
Target sequence
GGCGGGTGGATCATGAAGTCAGGAATTTGAGACCAGCCTGGCCAATATGGTGAAACCCTGACTCTAATAAAAAATACAAAAATTAGCCAGGTGTGGTGGCGCGTACCTCTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCCCTTGAACCCGGGAGGCAGAGGTTGTACTGAGCTGAGATTGCGCCACTACACTCCAGCCTGGGCAACACGGTGAAACTCCATTTCAAAAAAAAAAAAAAAAAAA
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Sample Information
×
Sample name
R1
Sample type
PBMC
Gender
Female
CpG Island Information
×
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