VISDB Viral Integration Site DataBase

VIS ID

TVIS30001361

Fusion event

HIV-TRA2B integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q27.2

Reference genome

Start

End

185649516/185930887 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-1-3p ; hsa-mir-378a-3p ; hsa-mir-30c-5p ; hsa-mir-196a-5p ; hsa-mir-17-5p ; hsa-let-7c-3p ; hsa-mir-3591-5p ; hsa-mir-921 ; hsa-mir-3606-5p ; hsa-mir-145-3p ; hsa-mir-27b-5p ; hsa-mir-539-5p ; hsa-mir-3174 ; hsa-mir-590-3p ; hsa-mir-4282 ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-548c-3p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-4670-3p ; hsa-mir-338-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-3613-3p ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-6715b-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-6715a-3p ; hsa-mir-6732-3p

Nearest miRNA

hsa-let-7g/Upstream/162983; hsa-mir-1248/Downstream/855785;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/104529, chr3-CpG: 93/Downstream/6381

Target sequence

GTGACCCACCTCTTCTAAGGGGAAGCTACGGTATTTTATCAGTAATCCTAGTCAATCAGCTGAAATAGGCATTAAACAGAAACAGAATTTGAAAAACCATCCCTGTGTATTTAGCAAATATGCATCTTAAATTTAGGGCCCAAATGCTCACAGATTTCCACTAGTGCCATATGGAAAAAACTAACACACTAATGCCAAAGGGAACTATTTTGTTCAATGCTTTGTTTGGATTTTGGGGGTTTGGTTCCATAACCA