Basic Information
VIS ID
TVIS30001367
Fusion event
HIV-chr17 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
End
38729271/40572079 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/378416; hsa-mir-10226/Downstream/945085;
Nearby gene
CCR7(No orient, 6595)
Target sequence
GGCAGTAATAAACAGCCTACCAACCAAAAAAAGTCCAGGACCAGATGGATTCACAGCTGAATTCCACCAGATGTACAGAAAAGAGTACCATTCCTACGGAAACTACTCAAAAAAATTGAAAAGGAGAGACTCCTTCCTAACTCATTCTGTGAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAAATATAACAAAAAAAGAAAACTTCAGGCCATTATCCTTGATGAACATTGAGCAAAAATCCTCAACAAAA
Reference
Wagner, T. A., et al. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science,2014, 345(6196): 570-573.
Curate