VISDB Viral Integration Site DataBase

VIS ID

TVIS30001380

Fusion event

HIV-CCSAP integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q42.13

Reference genome

Start

End

229476778/229340167 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-335-5p ; hsa-mir-221-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-29b-3p ; hsa-mir-92a-3p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-3180-5p ; hsa-mir-5701 ; hsa-mir-2053 ; hsa-mir-340-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-6721-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-6782-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-8087 ; hsa-mir-4311 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-510-3p ; hsa-mir-616-3p ; hsa-mir-508-3p ; hsa-mir-4317 ; hsa-mir-203a-3p ; hsa-mir-513b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/878015; hsa-mir-1182/Downstream/1679661;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/68785, chr1-CpG: 129/Downstream/1995

Target sequence

GTATTTAAAACCATCCACTTAAAAACCAGGATATTTAATCTTGTGCAAGCAACACAGGAGTCAAGAGGGCCTTACGGGTAGGAGCAAAACAAAAGATGCTGCGATTGAGTCCTGAAAGCAGAAAACATCCTTTCTTCTTCCTGATGCCTAAACCAGAAACGTTAGCAGGGAAGAAATAACTGAGAGGACGCTATATTTAAGGAAACCAAAATAATCATGAACTCAGAGCTTACCTGAGCTGGTAAATACAGGCAC