VISDB Viral Integration Site DataBase

VIS ID

TVIS30001388

Fusion event

HIV-GPBP1 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q11.2

Reference genome

Start

End

56552879/57256961 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-365a-3p ; hsa-mir-25-3p ; hsa-mir-539-5p ; hsa-mir-3646 ; hsa-mir-584-5p ; hsa-mir-1283 ; hsa-mir-4744 ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4660 ; hsa-mir-383-3p ; hsa-mir-4761-5p ; hsa-mir-646 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-4477a ; hsa-mir-6758-3p ; hsa-mir-1252-3p ; hsa-mir-126-5p ; hsa-mir-216a-5p ; hsa-mir-1281 ; hsa-mir-150-5p ; hsa-mir-1915-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4421 ; hsa-mir-4485-5p ; hsa-mir-4726-3p ; hsa-mir-4757-5p ; hsa-mir-498 ; hsa-mir-5571-5p ; hsa-mir-5699-3p ; hsa-mir-6744-3p ; hsa-mir-6748-3p ; hsa-mir-6764-5p ; hsa-mir-6778-3p ; hsa-mir-6787-3p ; hsa-mir-6814-5p ; hsa-mir-6840-3p ; hsa-mir-6878-3p

Nearest miRNA

hsa-mir-10397/Upstream/1748035; hsa-mir-103a-1/Downstream/1273082;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/82267, chr5-CpG: 157/Downstream/1202546

Target sequence

GACTTCTTAAGTTATATACATATAAATACTCATATTAGTTGAATTCAATAATATGGGGCAGTGATAGTTTTTGTTTTTGTTTTTTTTTTGA