VISDB Viral Integration Site DataBase

VIS ID

TVIS30001399

Fusion event

HIV-MSANTD4 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q22.3

Reference genome

Start

End

105884957/106013628 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-125b-2-3p ; hsa-mir-186-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-523-5p ; hsa-mir-518f-5p ; hsa-mir-526a ; hsa-mir-520c-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-522-5p ; hsa-mir-519a-5p ; hsa-mir-3074-3p ; hsa-mir-3163 ; hsa-mir-3591-5p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-361-5p ; hsa-mir-142-3p ; hsa-mir-4671-3p ; hsa-mir-223-5p ; hsa-mir-143-5p ; hsa-mir-6499-3p ; hsa-mir-6080 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-2115-3p ; hsa-mir-648 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-8062 ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-4528 ; hsa-mir-520g-5p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-4712-3p ; hsa-mir-3622a-3p ; hsa-mir-548c-3p ; hsa-mir-6083 ; hsa-mir-539-5p ; hsa-mir-1305 ; hsa-mir-4468 ; hsa-mir-3919 ; hsa-mir-545-3p ; hsa-mir-3973 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-4694-3p ; hsa-mir-1277-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-3662 ; hsa-mir-548a-5p ; hsa-mir-664b-5p ; hsa-mir-8076 ; hsa-mir-514a-5p ; hsa-mir-590-3p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30a-5p ; hsa-mir-30e-5p ; hsa-mir-30b-5p ; hsa-mir-6807-5p ; hsa-mir-3713 ; hsa-mir-210-5p ; hsa-mir-500b-3p ; hsa-mir-6769a-3p ; hsa-mir-6821-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-1251-3p ; hsa-mir-4486 ; hsa-mir-1825 ; hsa-mir-302c-3p ; hsa-mir-520f-3p ; hsa-mir-5698 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-377-3p ; hsa-mir-6722-5p ; hsa-mir-3194-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-5693 ; hsa-mir-6890-3p ; hsa-mir-1228-3p ; hsa-mir-6796-3p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p

Nearest miRNA

hsa-mir-10392/Upstream/2163648; hsa-let-7a-2/Downstream/5334129;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/402933, chr11-CpG: 26/Downstream/8370

Target sequence

GGCGGGCAGATTGCCTGAGCTCAGAAGTTCAAGACCAGCCTGGGCAGCATGGCAAAACCCCGTATCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGTGCACACCTATAATCCCAGCTACTCAGGAGGCTGAGGCACGAGAATCGCTTGAACCCAGTAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACCCCAACCTGGGGGAAACAGTGAGACTTTGTCTCAAACAACAACAACAACAAAAAA