VISDB Viral Integration Site DataBase

VIS ID

TVIS30001408

Fusion event

HIV-RALGPS2 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q25.2

Reference genome

Start

End

178868094/178898108 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-196a-5p ; hsa-mir-5004-3p ; hsa-mir-6809-3p ; hsa-mir-432-3p ; hsa-mir-4753-3p ; hsa-mir-1193 ; hsa-mir-627-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-3121-5p ; hsa-mir-6796-3p

Nearest miRNA

hsa-mir-101-1/Upstream/220274; hsa-mir-1182/Downstream/905816;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/172095, chr1-CpG: 141/Downstream/127615

Target sequence

TGAATCCAACCTTTTTCTCACTTTGAGAACAGCAGTACTAACTCTACAAATTGTTCTAGCAAAACTAATCTATGTAAATGTTGTAGGGTATATAGGCATTATTGTCAATTTGACCAGAATACAAAAAATAAATATTCACCGAAGAAATCTCCATGATCCTTCACTCAAGTCCTTTATCTCAATGCAAGAGCTATCTTAACAATTATATAATAATAGTGAGCAAAAAAGCTAGTGCTTAAGAATATATATGATCCC