VISDB Viral Integration Site DataBase

VIS ID

TVIS30001419

Fusion event

HIV-TBC1D13 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

131563432/128800731 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-let-7b-5p ; hsa-mir-26a-5p ; hsa-mir-142-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-1297 ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-4465 ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-5697 ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-3973 ; hsa-mir-661 ; hsa-mir-1254 ; hsa-mir-3116 ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-6852-5p ; hsa-mir-8089 ; hsa-mir-7154-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4696 ; hsa-mir-15b-3p ; hsa-mir-8060 ; hsa-mir-6760-5p ; hsa-mir-451b ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-1910-3p ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-505-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-1253 ; hsa-mir-6840-3p ; hsa-mir-218-1-3p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-648 ; hsa-mir-8485 ; hsa-mir-629-3p ; hsa-mir-6818-3p ; hsa-mir-4713-5p ; hsa-mir-6867-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3655 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-3667-3p ; hsa-mir-5088-3p ; hsa-mir-6810-5p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-4652-5p ; hsa-mir-3191-3p ; hsa-mir-3144-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-5001-3p ; hsa-mir-4792 ; hsa-mir-6828-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-873-5p ; hsa-mir-4468 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-125a-3p ; hsa-mir-6165 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p

Nearest miRNA

hsa-let-7a-1/Upstream/408017; hsa-mir-12126/Downstream/1068874;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/13464, chr9-CpG: 138/Downstream/17580

Target sequence

GTCACCCAGGCTGGAGTGCAATGGAGTGATCTTGGCTCACTGCAACTCTGTCTCCTAGGTTCAAACTATTCTCCCACCTCAGCCTCCCAAGTAGCTGAGATTATAGGTGCTCACAACCACGCCTGGCATTTTTTTGTTGTTGTTTTGTATTTTTAGTAGAGAGGGGGTTCCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGTG