VISDB Viral Integration Site DataBase

VIS ID

TVIS30001422

Fusion event

HIV-TRIM2 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q31.3

Reference genome

Start

End

154118405/153196726 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-181c-5p ; hsa-mir-335-5p ; hsa-mir-130b-3p ; hsa-mir-181a-5p ; hsa-mir-10a-5p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-186-5p ; hsa-mir-10b-5p ; hsa-mir-3190-3p ; hsa-mir-493-5p ; hsa-mir-574-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-5690 ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-6079 ; hsa-mir-411-5p ; hsa-mir-3117-3p ; hsa-mir-1258 ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-3681-5p ; hsa-mir-6849-5p ; hsa-mir-1244 ; hsa-mir-1197 ; hsa-mir-504-5p

Nearest miRNA

hsa-mir-12113/Upstream/660210; hsa-mir-1305/Downstream/5932076;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/42833, chr4-CpG: 51/Downstream/26156

Target sequence

CACAACCCATTAAGGAGGTGAAAAGTTCTAAACTCATTCCATTAAACTTACTACCTGGAAGCTCCATATTTATTATTCTACATAATTTCTTCTTATTTCTTTGAGAAAGAAAGTGGTGGCAAGGCCTAAAGTCAGTTTCATATGTAGTCAGACAGTGAAGAAGATGCTGCTAACCACACATCAACACAGTGTGGACTTCTGTCTTTCCAAACATGCCAATGGGTTTTCTATAAGCCTCCTACATTTTTTTGCTCG