VISDB Viral Integration Site DataBase

VIS ID

TVIS30001434

Fusion event

HIV-ZNF253 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

19996530/19884952 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-296-3p ; hsa-mir-4776-3p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-3124-3p ; hsa-mir-1914-5p ; hsa-mir-3163 ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-10395/Upstream/449794; hsa-let-7e/Downstream/514320;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/23898, chr19-CpG: 25/Downstream/16149

Target sequence

CTAACAAATATTTTAGAAAAAATACAAAACAAGCCGGGCACGGTGGCTGATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGACGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTATTAAAAATACAAAAAACTTAGCCGGGCATGGTGGCGGGCGCCCATAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGAAGGCAGAGCTTGCA