Basic Information
VIS ID
TVIS30001437
Fusion event
HIV-LOC100996442 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
164144/164144 (Hg38)
End
164144/164144 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
LOC100996442
Nearest miRNA
hsa-mir-1302-2/Upstream/133641; hsa-mir-101-1/Downstream/23747;
Nearest TSS
ENST00000473358/Upstream/3698; ENST00000412666/Downstream/194713;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28581, chr1-CpG: 104/Downstream/35107
Nearby gene
LOC729737(No orient, 23578)
Upstream sequence
tgcttgaacctggaaggcagagaatgtggtgacctgagatcacgtcattgccctcaagccacggcaatgagaacaaaattcggtaaaaacaaaacaaaac
Downstream sequence
aaaacaaaaTCACCATAAAATAACTCAGACTTAATTAAATACAACCCTAGTGGTGAATGACTAAAGATGGATTACTCATAACAGAGACAACAGTCCAATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate