Basic Information
VIS ID
TVIS30001438
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
759999/824619 (Hg38)
End
759999/824619 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/191934; hsa-mir-101-1/Downstream/342485;
Nearest TSS
ENST00000473358/Upstream/7248; ENST00000448179/Downstream/2903;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/45452, chr1-CpG: 111/Downstream/2417
Nearby gene
LINC00115(No orient, 1587)
Upstream sequence
ACATTATAAAATGCACCATTTATTTACTCTGCGATCAAACCCCCAACTTGCCCCAAGTGGAGGAACCCTCAGACATTTGCAGAGGAGTCAGTGTGCTAGT
Downstream sequence
AAGCAGCATTCTTTACAAATCTATGAACATCAAGGTCTCCTTGGAACAGATGCTCTGTGAACAATTTATAAAACTCCCTCCTGTTAGACACTTAGGTTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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