VISDB Viral Integration Site DataBase

VIS ID

TVIS30001441

Fusion event

HIV-SLC35E2A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.33

Reference genome

Start

End

1674731/1743292 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-9-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-371b-5p ; hsa-mir-431-5p ; hsa-mir-873-5p ; hsa-mir-1827 ; hsa-mir-4635 ; hsa-mir-4649-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-490-3p ; hsa-mir-5089-5p ; hsa-mir-6866-5p ; hsa-mir-877-5p ; hsa-mir-610 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6516-5p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-193b-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6134 ; hsa-mir-4537 ; hsa-mir-3192-5p ; hsa-mir-7851-3p ; hsa-mir-4668-5p ; hsa-mir-561-3p ; hsa-mir-4727-3p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4283 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4284 ; hsa-mir-6871-5p ; hsa-mir-7703 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-873-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-1468-3p ; hsa-mir-4638-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-3690 ; hsa-mir-545-3p ; hsa-mir-8063 ; hsa-mir-548p ; hsa-mir-383-5p ; hsa-mir-3120-3p ; hsa-mir-605-5p ; hsa-mir-4668-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-383-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3714 ; hsa-mir-1292-3p ; hsa-mir-1273g-3p ; hsa-mir-455-3p

Nearest miRNA

hsa-mir-12136/Upstream/403584; hsa-mir-101-1/Downstream/1384683;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3630, chr1-CpG: 157/Downstream/2070

Upstream sequence

gcagtgagcccagactgcgccgctgcactccagcctgggcaacagggcgagactctgtcttaagaaaaaaaaaGGCCAGACTtgtctcacgcctgtaatc

Downstream sequence

ccagcactttgggaggctgaggtgggcggatcacccgaggttgagagttccagatcagtctgaccaacgtggagaaaccccatctctactaaaaatacaa