VISDB Viral Integration Site DataBase

VIS ID

TVIS30001448

Fusion event

HIV-CEP104 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.32

Reference genome

Start

End

3763591/3847027 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1301-3p ; hsa-mir-23b-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-302a-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-605-3p ; hsa-mir-3910 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-3135a ; hsa-mir-4696 ; hsa-mir-766-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-4432 ; hsa-mir-508-5p ; hsa-mir-6878-3p ; hsa-mir-7111-3p ; hsa-mir-340-5p ; hsa-mir-6744-3p ; hsa-mir-6829-3p ; hsa-mir-4757-5p ; hsa-mir-6791-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-5193 ; hsa-mir-6087 ; hsa-mir-219b-3p ; hsa-mir-4459 ; hsa-mir-1247-3p ; hsa-mir-302f ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6721-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-383-3p ; hsa-mir-4761-5p ; hsa-mir-1273g-3p ; hsa-mir-1292-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-12136/Upstream/286237; hsa-mir-101-1/Downstream/2015645;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/31576, chr1-CpG: 110/Downstream/9596

Upstream sequence

GCAGCCTGAAGCTGGAGAGATTCTGGATTACATGCAACATTCATGTGTCCACAATTTCCACCAGGGAATTTACCTTGTGCACGTTGGGAGGGTTTATTTA

Downstream sequence

CAACTgtgctgtcctacacaaataggatgtgagccacatatgtcattaaggttaagtaggcacattaaaaaatttaaaaatgcaattaattttaaaaata