Basic Information
VIS ID
TVIS30001455
Fusion event
HIV-SLC2A7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
9060036/8999977 (Hg38)
End
9060036/8999977 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
SLC2A7
Nearest miRNA
hsa-mir-12136/Upstream/133387; hsa-mir-101-1/Downstream/151691;
Nearest TSS
ENST00000473358/Upstream/54090; ENST00000634966/Downstream/26368;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/120690, chr1-CpG: 93/Downstream/39244
Nearby gene
SLC2A7(No orient, 3323)
Upstream sequence
CCCAATGGAGACTCTGGGATGAGCGTGCAGGGGACGCAGCTGTCAGATCCATTTCTAATAGCAGCCATGAAGATGAACCCTGACCTTTGTGAAATGCTTC
Downstream sequence
GTACTTACCAAGCATTTCCACCCGATTtatgtgaggcaaagattatcagcctcaatttagagacatgcaaagtaaaactaaaagaccttaagtaacttAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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